Transcript: SQLE-001 OTTHUMT00000381362.1

Description

squalene epoxidase

Location

Chromosome 8: 124,998,506-125,022,283 forward strand.

About this transcript

This transcript has 11 exons and is annotated with 21 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000164990 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SQLE-001	OTTHUMT00000381362.1	2961	574aa	OTTHUMP00000228146	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS47918	Q14534
SQLE-002	OTTHUMT00000381361.1	1879	479aa	OTTHUMP00000228145	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E7EVQ6
SQLE-004	OTTHUMT00000381363.2	711	184aa	OTTHUMP00000228147	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E5RJH9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SQLE-008	OTTHUMT00000381365.1	554	163aa	OTTHUMP00000228148	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H0YBN7	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SQLE-003	OTTHUMT00000381364.1	1799	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
SQLE-006	OTTHUMT00000381367.1	743	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SQLE-005	OTTHUMT00000381366.1	737	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 11 Transcript length: 2,961 bps Translation length: 574 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS47918

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 09/04/2010)

Alternative symbols

RP11-6D1.2-001

Other assemblies

This transcript maps to 124,998,506-125,022,283 in GRCh38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000265896

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SQLE-001 OTTHUMT00000381362.1

Summary

Transcript-based displays