Description
serine hydroxymethyltransferase 2 (mitochondrial)
Location
Chromosome 12: 57,230,360-57,234,935 forward strand.
About this transcript
This transcript has 11 exons and is annotated with 4 domains and features.
Gene
This transcript is a product of gene OTTHUMG00000171246 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SHMT2-001 | OTTHUMT00000412525.2 | 2537 | 504aa | OTTHUMP00000245559 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS8934 | P34897 | |
| SHMT2-008 | OTTHUMT00000412534.2 | 2121 | 483aa | OTTHUMP00000245566 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS53805 | P34897 | |
| SHMT2-005 | OTTHUMT00000412529.1 | 2006 | 483aa | OTTHUMP00000245562 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS53805 | P34897 | |
| SHMT2-015 | OTTHUMT00000412539.1 | 1918 | 494aa | OTTHUMP00000245570 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS55837 | - | |
| SHMT2-009 | OTTHUMT00000412533.2 | 1765 | 483aa | OTTHUMP00000245565 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS53805 | P34897 | |
| SHMT2-030 | OTTHUMT00000412669.1 | 1369 | 264aa | OTTHUMP00000245662 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0YIZ0 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SHMT2-019 | OTTHUMT00000412541.3 | 964 | 234aa | OTTHUMP00000245571 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | G3V2Y4 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SHMT2-028 | OTTHUMT00000412664.2 | 780 | 215aa | OTTHUMP00000245657 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | G3V5L0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SHMT2-033 | OTTHUMT00000412673.2 | 768 | 237aa | OTTHUMP00000245663 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | G3V4W5 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SHMT2-027 | OTTHUMT00000412654.1 | 600 | 149aa | OTTHUMP00000245650 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | G3V4T0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SHMT2-023 | OTTHUMT00000412650.2 | 579 | 160aa | OTTHUMP00000245648 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | G3V2W0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SHMT2-038 | OTTHUMT00000412710.1 | 572 | 147aa | OTTHUMP00000245693 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | G3V3Y8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SHMT2-025 | OTTHUMT00000412653.2 | 569 | 159aa | OTTHUMP00000245649 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | G3V4X0 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SHMT2-022 | OTTHUMT00000412649.2 | 562 | 147aa | OTTHUMP00000245647 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | G3V3Y8 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SHMT2-021 | OTTHUMT00000412648.2 | 542 | 142aa | OTTHUMP00000245646 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | G3V241 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SHMT2-014 | OTTHUMT00000412526.1 | 1839 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SHMT2-007 | OTTHUMT00000412531.1 | 1488 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SHMT2-003 | OTTHUMT00000412523.1 | 1446 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SHMT2-012 | OTTHUMT00000412532.2 | 2311 | 65aa | OTTHUMP00000245564 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G3V2Y1 | |
| SHMT2-004 | OTTHUMT00000412528.2 | 2215 | 86aa | OTTHUMP00000245561 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G3V3C6 | |
| SHMT2-011 | OTTHUMT00000412536.1 | 2152 | 192aa | OTTHUMP00000245568 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G3V540 | |
| SHMT2-013 | OTTHUMT00000412527.2 | 1904 | 171aa | OTTHUMP00000245560 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G3V2E4 | |
| SHMT2-010 | OTTHUMT00000412535.2 | 1885 | 65aa | OTTHUMP00000245567 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G3V2Y1 | |
| SHMT2-006 | OTTHUMT00000412530.1 | 1659 | 65aa | OTTHUMP00000245563 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G3V2Y1 | |
| SHMT2-035 | OTTHUMT00000412674.1 | 895 | 86aa | OTTHUMP00000245664 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G3V3C6 | |
| SHMT2-036 | OTTHUMT00000412708.2 | 879 | 192aa | OTTHUMP00000245691 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G3V540 | |
| SHMT2-020 | OTTHUMT00000412548.1 | 576 | 52aa | OTTHUMP00000245575 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | G3V2D2 | |
| SHMT2-034 | OTTHUMT00000412672.1 | 837 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SHMT2-026 | OTTHUMT00000412652.1 | 817 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SHMT2-016 | OTTHUMT00000412537.1 | 569 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SHMT2-037 | OTTHUMT00000412709.1 | 552 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SHMT2-002 | OTTHUMT00000412524.1 | 3416 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SHMT2-032 | OTTHUMT00000412670.1 | 941 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SHMT2-031 | OTTHUMT00000412671.1 | 611 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SHMT2-018 | OTTHUMT00000412540.1 | 584 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SHMT2-017 | OTTHUMT00000412538.1 | 566 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SHMT2-029 | OTTHUMT00000412665.2 | 525 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SHMT2-024 | OTTHUMT00000412651.1 | 457 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
