Description
ceroid-lipofuscinosis, neuronal 5
Location
Chromosome 13: 76,992,084-77,002,506 forward strand.
About this transcript
This transcript has 4 exons and is annotated with 5 domains and features.
Gene
This transcript is a product of gene OTTHUMG00000017100 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| CLN5-001 | OTTHUMT00000045318.2 | 6664 | 407aa | OTTHUMP00000018521 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS9456 | O75503 | |
| CLN5-016 | OTTHUMT00000489752.1 | 5060 | 277aa | OTTHUMP00000282250 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GV94 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CLN5-008 | OTTHUMT00000489745.3 | 2683 | 216aa | OTTHUMP00000282247 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GTR6 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CLN5-003 | OTTHUMT00000475893.2 | 2629 | 358aa | OTTHUMP00000275379 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | O75503 | |
| CLN5-019 | OTTHUMT00000489754.1 | 2527 | 210aa | OTTHUMP00000282251 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1C7CYZ2 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CLN5-009 | OTTHUMT00000489740.1 | 2520 | 204aa | OTTHUMP00000282245 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GTI0 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CLN5-010 | OTTHUMT00000489744.2 | 2508 | 271aa | OTTHUMP00000282246 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GUE8 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CLN5-015 | OTTHUMT00000489748.1 | 2408 | 304aa | OTTHUMP00000282249 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GWI2 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CLN5-021 | OTTHUMT00000489755.1 | 2368 | 249aa | OTTHUMP00000282252 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A1B0GTV7 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CLN5-002 | OTTHUMT00000045319.6 | 2341 | 205aa | OTTHUMP00000275046 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | A0A087WZY0 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CLN5-004 | OTTHUMT00000489742.1 | 2120 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| CLN5-005 | OTTHUMT00000489741.1 | 1407 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| CLN5-018 | OTTHUMT00000489756.1 | 2517 | 125aa | OTTHUMP00000282253 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A1B0GVL0 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| CLN5-014 | OTTHUMT00000489747.1 | 1791 | 36aa | OTTHUMP00000282248 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | A0A1B0GU14 | |
| CLN5-012 | OTTHUMT00000489746.1 | 2511 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CLN5-006 | OTTHUMT00000489743.1 | 604 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CLN5-011 | OTTHUMT00000489751.1 | 549 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| CLN5-013 | OTTHUMT00000489749.3 | 5889 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| CLN5-020 | OTTHUMT00000489757.1 | 2863 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| CLN5-017 | OTTHUMT00000489753.2 | 2791 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| CLN5-007 | OTTHUMT00000489750.1 | 661 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
