Transcript: Samhd1-001 OTTMUST00000038703.2

Description

SAM domain and HD domain 1

Location

Chromosome 2: 157,097,533-157,135,265 reverse strand.

About this transcript

This transcript has 16 exons and is annotated with 14 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000016173 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Samhd1-001	OTTMUST00000038703.2	3926	658aa	OTTMUSP00000017309	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS16973	Q60710
Samhd1-002	OTTMUST00000038704.2	3245	582aa	OTTMUSP00000017310	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Samhd1-005	OTTMUST00000038707.2	2036	631aa	OTTMUSP00000047129	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Samhd1-003	OTTMUST00000038705.2	3753	150aa	OTTMUSP00000047128	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
Samhd1-004	OTTMUST00000038706.2	1375	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Samhd1-009	OTTMUST00000086955.1	681	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Samhd1-008	OTTMUST00000038710.1	678	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Samhd1-006	OTTMUST00000038708.1	542	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Samhd1-007	OTTMUST00000038709.1	473	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 16 Transcript length: 3,926 bps Translation length: 658 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS16973

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 31/07/2013 (Created on 15/03/2006)

Alternative symbols

RP23-163J20.2-001

Remarks

NP_061339.3

Other assemblies

This transcript maps to 157,097,533-157,135,265 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000057725

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Samhd1-001 OTTMUST00000038703.2

Summary

Transcript-based displays