Transcript: Tnfrsf1a-001 OTTMUST00000058165.1

Description

tumor necrosis factor receptor superfamily, member 1a

Location

Chromosome 6: 125,349,723-125,362,484 forward strand.

About this transcript

This transcript has 10 exons and is annotated with 37 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000023806 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Tnfrsf1a-001	OTTMUST00000058165.1	2156	454aa	OTTMUSP00000028139	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS20550	Q3U479
Tnfrsf1a-006	OTTMUST00000058194.2	885	295aa	OTTMUSP00000028163	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F7A4X5	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
Tnfrsf1a-003	OTTMUST00000058191.2	390	65aa	OTTMUSP00000028161	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Tnfrsf1a-008	OTTMUST00000139955.1	1962	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Tnfrsf1a-002	OTTMUST00000058190.1	920	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
Tnfrsf1a-004	OTTMUST00000058192.3	621	107aa	OTTMUSP00000045442	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	F6R6K0	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Tnfrsf1a-007	OTTMUST00000084343.1	250	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Tnfrsf1a-005	OTTMUST00000058193.2	764	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 10 Transcript length: 2,156 bps Translation length: 454 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS20550

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 24/03/2015 (Created on 16/03/2007)

Alternative symbols

RP23-402K14.3-001

Other assemblies

This transcript maps to 125,349,723-125,362,484 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000032491

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Tnfrsf1a-001 OTTMUST00000058165.1

Summary

Transcript-based displays