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ENCODE regions in Vega

Vega shows the manual annotation of the 44 target regions of the human genome studied by the ENCODE pilot project. Further details are available from Ensembl and the UCSC browser. The locations of the Encode regions on the Vega assembly are shown in the table below.

Relevant Publications:

  • GENCODE: producing a reference annotation for ENCODE. Harrow et al., Genome Biol. 2006;7 Suppl 1:S4.1-9. Epub 2006 Aug 7.
  • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. The ENCODE Project Consortium. Nature 447, 799-816 (14 June 2007).
Region name Chr. start ... end Length Description
ENm001 7 115810521...117687946 1877426 Manual Picks:CFTR
ENm002 5 131256415...132256414 1000000 Manual Picks:Interleukin
ENm003 11 116457106...116957105 500000 Manual Picks:Apo
ENm004 22 31803954...33503953 1700000 Manual Picks:Chr22
ENm005 21 33746366...34166189 419824 Manual Picks:Chr21
ENm006 X 153114298...154409887 1295590 Manual Picks:ChrX
ENm007 19 54331773...55332648 1000876 Manual Picks:Chr19
ENm008 16 60001...232342 172342 Manual Picks:Alpha
ENm009 11 4774420...5776011 1001592 Manual Picks:Beta
ENm010 7 26957521...27457520 500000 Manual Picks:HOXA
ENm011 11 1743416...2349463 606048 Manual Picks:1GF2/H19
ENm012 7 113933133...114933132 1000000 Manual Picks:FOXP2
ENm013 7 89783689...90898112 1114424 Manual Picks
ENm014 7 126078656...127241852 1163197 Manual Picks
ENr111 13 30520016...31020015 500000 Random Picks
ENr112 2 51658705...52158704 500000 Random Picks
ENr113 4 118246656...118746655 500000 Random Picks
ENr114 10 55483813...55983812 500000 Random Picks
ENr121 2 118294574...118794573 500000 Random Picks
ENr122 18 61261321...61761320 500000 Random Picks
ENr123 12 40340210...40840209 500000 Random Picks
ENr131 2 234491825...234991888 500064 Random Picks
ENr132 13 113290064...113790063 500000 Random Picks
ENr133 21 40322597...40822596 500000 Random Picks
ENr211 16 25872927...26372927 500001 Random Picks
ENr212 5 141899967...142358312 458346 Random Picks
ENr213 18 25465234...25965233 500000 Random Picks
ENr221 5 55835250...56335249 500000 Random Picks
ENr222 6 132176847...132676846 500000 Random Picks
ENr223 6 73733232...74233231 500000 Random Picks
ENr231 1 151158061...151658060 500000 Random Picks
ENr232 9 131685302...132185301 500000 Random Picks
ENr233 15 43732797...44232796 500000 Random Picks
ENr311 14 53877326...54377325 500000 Random Picks
ENr312 11 131099588...131599587 500000 Random Picks
ENr313 16 62276449...62776448 500000 Random Picks
ENr321 8 118813040...119313039 500000 Random Picks
ENr322 14 99388471...99888470 500000 Random Picks
ENr323 6 108264704...108764703 500000 Random Picks
ENr324 X 122782315...123282314 500000 Random Picks
ENr331 2 220277346...220777345 500000 Random Picks
ENr332 11 64184313...64684312 500000 Random Picks
ENr333 20 33841513...33852539 11027 Random Picks
ENr334 6 41297917...41797916 500000 Random Picks