Description
smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)
Synonyms
FLJ12886
Location
Chromosome 19: 43,727,992-43,754,990 reverse strand.
VEGA68:CM000681.2
About this gene
This gene has 13 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SMG9-001 | OTTHUMT00000317668.2 | 5510 | 520aa | OTTHUMP00000197093 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS33043 | Q9H0W8 | |
| SMG9-002 | OTTHUMT00000463586.1 | 2387 | 495aa | OTTHUMP00000270139 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | |
| SMG9-008 | OTTHUMT00000463592.2 | 697 | 156aa | OTTHUMP00000270142 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG9-005 | OTTHUMT00000463591.2 | 650 | 183aa | OTTHUMP00000270141 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG9-007 | OTTHUMT00000463595.2 | 576 | 115aa | OTTHUMP00000270145 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG9-006 | OTTHUMT00000463593.2 | 550 | 148aa | OTTHUMP00000270143 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG9-009 | OTTHUMT00000463594.2 | 438 | 120aa | OTTHUMP00000270144 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SMG9-004 | OTTHUMT00000463589.1 | 1077 | 157aa | OTTHUMP00000270140 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SMG9-003 | OTTHUMT00000463590.1 | 1401 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SMG9-010 | OTTHUMT00000463596.1 | 681 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SMG9-011 | OTTHUMT00000463588.1 | 574 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SMG9-012 | OTTHUMT00000463587.1 | 563 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SMG9-013 | OTTHUMT00000463585.1 | 538 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
