MouseVega Home


Mus musculus

Annotation progress

Click on a chromosome to browse:

chromosome 1 chromosome 2 chromosome 3 chromosome 4 chromosome 5 chromosome 6 chromosome 7 chromosome 8 chromosome 9 chromosome 10 chromosome 11 chromosome 12 chromosome 13 chromosome 14 chromosome 15 chromosome 16 chromosome 17 chromosome 18 chromosome 19 chromosome X chromosome Y Karyotype selector

The arrows () indicate the approximate positions of the Idd regions annotated in different strains.

Shading indicates the karyotype bands and unannotated regions.

This Release

Release Date 7 February 2017
Datafreeze Date 18 October 2016
Havana Update Date 7 February 2017
As used in GENCODE M13; Ensembl 88 genebuild
Reference Assembly GRCm38
Reference Strain C57BL/6J
Annotation Method Manual Annotation

IDD Regions and Strains

Candidate Insulin dependent diabetes (Idd) regions on chromosomes 1, 3, 4, 6, 11 and 17 have been annotated in both the CL57BL/6J reference strain and one or more of NOD/MrkTac, NOD/ShiLtJ and 129 strains. Vega contains a comparative analysis of these regions in the different strains.

Havana Update

The Havana Update gene set presents updates to annotation outside of the regular release schedule.

Comparative Analysis

Region Available species / haplotypes / strains Examples
MHC rat, dog, gorilla, chimpanzee, wallaby, pig (Duroc and Large White), mouse (ref. and 2 NOD strains), rat (mixed sex strain), human (ref. and 7 haplotypes) example
IDD mouse (ref. and NOD strains). example
Auto­some mouse chr 4 and human chr 1; mouse chr 11 and human chr 17 1/4 17/11
Allo­some X: mouse, human and pig example
Sample Region mouse chr 2, human chr 20 and approx 10Mbp of pig chr 17 example

About this species