|Release Date||25 November 2014|
|Datafreeze Date||5 August 2014|
|Havana Update Date||20 February 2015|
|As used in||Ensembl 78 genebuild|
|Reference Assembly||GENCODE M4;GRCm38|
|Annotation Method||Manual Annotation|
IDD Regions and Strains
Candidate Insulin dependent diabetes (Idd) regions on chromosomes 1, 3, 4, 6, 11 and 17 have been annotated in both the CL57BL/6J reference strain and one or more of NOD/MrkTac, NOD/ShiLtJ and 129 strains. Vega contains a comparative analysis of these regions in the different strains.
Vega shows artificial loci generated by the mouse Knockout programs.
|Region||Available species / haplotypes / strains||Examples|
|MHC||dog, gorilla, chimpanzee, wallaby, pig (Duroc and Large White), mouse (ref. and 2 NOD strains), human (ref. and 7 haplotypes)||example|
|IDD||mouse (ref. and NOD strains).||example|
|Autosome||mouse chr 4 and human chr 1; mouse chr 11 and human chr 17||1/4 17/11|
|Allosome||X: mouse, human and pig||example|
|Sample Region||mouse chr 2, human chr 20 and approx 10Mbp of pig chr 17||example|