This is an archived version of Vega. Click here for more information.

Human

Loading…

Help & Documentation

Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
- Genomic alignments
- Orthologues
- Alt. alleles
Ontologies
- GO: Cellular component
- GO: Biological process
- GO: Molecular function
Gene expression
External references
Supporting evidence
Other genome browsers
- Ensembl

Configure this page

Share this page

Bookmark this page

.

Gene: COL6A6 OTTHUMG00000159653

.

Description

collagen type VI alpha 6

Location

Chromosome 3: 130,560,334-130,678,155 forward strand.

VEGA68:CM000665.2

About this gene

This gene has 3 transcripts (splice variants).

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
COL6A6-001	OTTHUMT00000356705.5	9581	2263aa	OTTHUMP00000216111	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS46911	A6NMZ7
COL6A6-003	OTTHUMT00000357023.2	778	259aa	OTTHUMP00000216297	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
COL6A6-002	OTTHUMT00000357022.1	4353	298aa	OTTHUMP00000216296	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

.

Summary

.

.

Gene-based displays