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Summary
- Splice variants
- Transcript comparison
Sequence
Comparative Genomics
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- Orthologues
- Alt. alleles
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Gene: COL9A1 OTTHUMG00000014988

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Description

collagen, type IX, alpha 1

Location

Chromosome 6: 70,215,061-70,303,083 reverse strand.

VEGA68:CM000668.2

About this gene

This gene has 10 transcripts (splice variants), 11 orthologues and 8 paralogues.

Transcripts

Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	CCDS	UniProt	Flags
COL9A1-001	OTTHUMT00000041131.2	4761	921aa	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS4971	P20849
COL9A1-002	OTTHUMT00000041132.3	3059	678aa	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS47447	-
COL9A1-004	OTTHUMT00000041134.1	1372	328aa	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
COL9A1-009	OTTHUMT00000315865.1	1940	No protein	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL9A1-008	OTTHUMT00000315864.1	1844	No protein	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL9A1-010	OTTHUMT00000374944.1	699	No protein	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL9A1-007	OTTHUMT00000315863.2	690	No protein	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
COL9A1-005	OTTHUMT00000315861.2	1117	No protein	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
COL9A1-003	OTTHUMT00000041133.1	531	No protein	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
COL9A1-006	OTTHUMT00000315862.2	243	No protein	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

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Summary

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