Description
synaptojanin 1
Synonyms
PARK20, INPP5G
Location
Chromosome 21: 32,628,763-32,728,048 reverse strand.
VEGA68:CM000683.2
About this gene
This gene has 10 transcripts (splice variants), 2 orthologues and 1 paralogue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SYNJ1-001 | OTTHUMT00000139425.4 | 7094 | 1350aa | OTTHUMP00000067396 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS33540 | C9JFZ1 | |
| SYNJ1-014 | OTTHUMT00000484401.1 | 6898 | 1526aa | OTTHUMP00000279360 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS54484 | J3KPK1 | |
| SYNJ1-004 | OTTHUMT00000139428.4 | 4852 | 1612aa | OTTHUMP00000067399 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS33539 | J3KQV8 | |
| SYNJ1-003 | OTTHUMT00000338108.1 | 3604 | 187aa | OTTHUMP00000207147 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYNJ1-002 | OTTHUMT00000139426.4 | 2212 | 695aa | OTTHUMP00000067397 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9JW66 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SYNJ1-006 | OTTHUMT00000193334.3 | 583 | 178aa | OTTHUMP00000196004 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | C9J1Z6 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SYNJ1-009 | OTTHUMT00000319309.1 | 422 | 131aa | OTTHUMP00000198098 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SYNJ1-013 | OTTHUMT00000139427.5 | 6991 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SYNJ1-007 | OTTHUMT00000193335.1 | 578 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SYNJ1-005 | OTTHUMT00000139429.2 | 977 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
