Transcript: SPTLC1-003 OTTHUMT00000055555.1

Description

serine palmitoyltransferase, long chain base subunit 1

Location

Chromosome 9: 92,031,145-92,115,408 reverse strand.

About this transcript

This transcript has 4 exons.

Gene

This transcript is a product of gene OTTHUMG00000021047 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
SPTLC1-001	OTTHUMT00000055553.1	1894	473aa	OTTHUMP00000022810	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS6692	O15269
SPTLC1-002	OTTHUMT00000055554.1	946	143aa	OTTHUMP00000022811	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS6693	-
SPTLC1-003	OTTHUMT00000055555.1	1566	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
SPTLC1-006	OTTHUMT00000055558.1	837	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SPTLC1-005	OTTHUMT00000055557.1	808	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SPTLC1-004	OTTHUMT00000055556.1	686	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SPTLC1-008	OTTHUMT00000055560.1	490	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SPTLC1-007	OTTHUMT00000055559.1	359	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 4 Transcript length: 1,566 bps

Class

artifact [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 11/12/2003)

Alternative symbols

RP11-118F2.1-003

Remarks

non-canonical splice acceptor site at 5' end

non-canonical splice donor site adjacent to exon 3

serine palmitoyltransferase, long chain base subunit 1

Other assemblies

This transcript maps to 92,031,145-92,115,408 in GRCh38 (Ensembl) coordinates.

Stable ID not present in Ensembl

Curation Method

Manual annotation from Havana

Select a species

Recent locations

Transcript: SPTLC1-003 OTTHUMT00000055555.1

Summary

Transcript-based displays