Transcript: AHCTF1-007 OTTHUMT00000357439.1

Description

AT hook containing transcription factor 1

Location

Chromosome 1: 246,840,962-246,849,849 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 1 domain and feature.

Gene

This transcript is a product of gene OTTHUMG00000040706 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
AHCTF1-002	OTTHUMT00000097818.1	8633	2275aa	OTTHUMP00000038419	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS1629	Q8WYP5
AHCTF1-001	OTTHUMT00000097817.1	8751	2301aa	OTTHUMP00000038418	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
AHCTF1-005	OTTHUMT00000357437.2	611	67aa	OTTHUMP00000216555	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
AHCTF1-007	OTTHUMT00000357439.1	355	80aa	OTTHUMP00000216556	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
AHCTF1-003	OTTHUMT00000097819.1	7041	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
AHCTF1-004	OTTHUMT00000097820.1	3451	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
AHCTF1-006	OTTHUMT00000357438.1	571	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 3 Transcript length: 355 bps Translation length: 80 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 27/02/2014 (Created on 30/06/2009)

Alternative symbols

RP11-397A15.1-007

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 246,840,962-246,849,849 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000498601

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: AHCTF1-007 OTTHUMT00000357439.1

Summary

Transcript-based displays