Transcript: ARHGEF15-005 OTTHUMT00000442308.2

Description

Rho guanine nucleotide exchange factor (GEF) 15

Location

Chromosome 17: 8,310,241-8,312,388 forward strand.

About this transcript

This transcript has 3 exons and is annotated with 5 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000108187 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
ARHGEF15-001	OTTHUMT00000226993.3	4159	841aa	OTTHUMP00000135329	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS11139	A0A0S2Z547
ARHGEF15-004	OTTHUMT00000442310.2	714	207aa	OTTHUMP00000259602	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
ARHGEF15-005	OTTHUMT00000442308.2	537	116aa	OTTHUMP00000259601	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
ARHGEF15-003	OTTHUMT00000442311.1	2398	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
ARHGEF15-006	OTTHUMT00000442312.1	668	91aa	OTTHUMP00000259603	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
ARHGEF15-008	OTTHUMT00000442314.1	248	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
ARHGEF15-002	OTTHUMT00000442309.1	2105	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
ARHGEF15-007	OTTHUMT00000442313.1	469	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 3 Transcript length: 537 bps Translation length: 116 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 18/01/2012)

Alternative symbols

AC135178.3-005

Remarks

alternative 5' UTR

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 8,310,241-8,312,388 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000583529

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: ARHGEF15-005 OTTHUMT00000442308.2

Summary

Transcript-based displays