Transcript: CTD-3088G3.8-005 OTTHUMT00000436790.3

Description

novel lipoprotein amino terminal region containing protein

Location

Chromosome 16: 11,442,191-11,491,755 reverse strand.

About this transcript

This transcript has 23 exons and is annotated with 3 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000178167 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
CTD-3088G3.8-001	OTTHUMT00000440798.3	10568	3231aa	OTTHUMP00000258670	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	M0QZD8
CTD-3088G3.8-009	OTTHUMT00000436787.1	2085	455aa	OTTHUMP00000256581	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
CTD-3088G3.8-008	OTTHUMT00000436786.1	550	46aa	OTTHUMP00000256580	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
CTD-3088G3.8-005	OTTHUMT00000436790.3	3552	79aa	OTTHUMP00000256582	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	M0R1J3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
CTD-3088G3.8-002	OTTHUMT00000436328.3	1046	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
CTD-3088G3.8-004	OTTHUMT00000436329.2	518	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
CTD-3088G3.8-010	OTTHUMT00000436788.1	456	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
CTD-3088G3.8-006	OTTHUMT00000436791.1	401	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 23 Transcript length: 3,552 bps Translation length: 79 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 28/02/2014 (Created on 17/10/2011)

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 11,442,191-11,491,755 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000595170

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: CTD-3088G3.8-005 OTTHUMT00000436790.3

Summary

Transcript-based displays