Transcript: SMG5-001 OTTHUMT00000046308.1

Description

Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)

Location

About this transcript

This transcript has 22 exons and is annotated with 18 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
SMG5-001	OTTHUMT00000046308.1	4559	1016aa	OTTHUMP00000018886	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS1137	Q9UPR3
SMG5-008	OTTHUMT00000099273.2	535	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SMG5-005	OTTHUMT00000046312.2	1161	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SMG5-004	OTTHUMT00000046311.1	541	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SMG5-003	OTTHUMT00000046310.1	345	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 22 Transcript length: 4,559 bps Translation length: 1,016 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS1137

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 27/02/2014 (Created on 03/03/2004)

Alternative symbols

RP11-54H19.7-001

Other assemblies

This transcript maps to 156,249,224-156,282,825 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000361813

Curation Method

Manual annotation from Havana