Transcript: RFX3-007 OTTHUMT00000051546.1

Description

regulatory factor X, 3 (influences HLA class II expression)

Location

Chromosome 9: 3,247,514-3,257,199 reverse strand.

About this transcript

This transcript has 3 exons and is annotated with 2 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000019456 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
RFX3-006	OTTHUMT00000051545.1	9307	749aa	OTTHUMP00000020994	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS6449	P48380
RFX3-005	OTTHUMT00000051544.1	2971	707aa	OTTHUMP00000020993	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS6450	P48380
RFX3-004	OTTHUMT00000051543.2	869	138aa	OTTHUMP00000020992	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6XM74	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
RFX3-003	OTTHUMT00000051542.2	822	216aa	OTTHUMP00000020991	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6UGA0	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
RFX3-008	OTTHUMT00000051547.2	814	174aa	OTTHUMP00000020996	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
RFX3-002	OTTHUMT00000051541.2	740	184aa	OTTHUMP00000020990	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F6UV76	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
RFX3-007	OTTHUMT00000051546.1	633	124aa	OTTHUMP00000020995	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
RFX3-009	OTTHUMT00000051548.1	526	135aa	OTTHUMP00000020997	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H0Y790	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
RFX3-010	OTTHUMT00000051549.1	492	156aa	OTTHUMP00000020998	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H0Y7Z4	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
RFX3-001	OTTHUMT00000051540.1	364	85aa	OTTHUMP00000020989	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A9Z1Z2

Summary

Statistics

Exons: 3 Transcript length: 633 bps Translation length: 124 residues

Class

protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 11/12/2003)

Alternative symbols

RP11-32F11.3-007

Remarks

regulatory factor X, 3 (influences HLA class II expression)

this variant and variant 4 could be part of the same variant

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 3,247,514-3,257,199 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000449234

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: RFX3-007 OTTHUMT00000051546.1

Summary

Transcript-based displays