Transcript: HMCN2-003 OTTHUMT00000054659.4

Description

hemicentin 2

Location

About this transcript

This transcript has 29 exons and is annotated with 37 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
HMCN2-001	OTTHUMT00000276096.3	15610	5059aa	OTTHUMP00000178540	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q8NDA2
HMCN2-004	OTTHUMT00000478913.2	926	309aa	OTTHUMP00000277795	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H0Y3X1	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
HMCN2-003	OTTHUMT00000054659.4	4802	479aa	OTTHUMP00000277794	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
HMCN2-005	OTTHUMT00000478914.1	4014	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
HMCN2-002	OTTHUMT00000054660.1	2220	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 29 Transcript length: 4,802 bps Translation length: 479 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 4, last modified on 23/04/2014 (Created on 09/04/2003)

Alternative symbols

RP11-88G17.4-003

Remarks

indel causes a frameshift in exon 9

novel transcript (DKFZp434P0216)

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 130,384,449-130,419,582 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000487727

Curation Method

Manual annotation from Havana