Transcript: SS18L1-004 OTTHUMT00000080005.3

Description

synovial sarcoma translocation gene on chromosome 18-like 1

Location

About this transcript

This transcript has 5 exons and is annotated with 4 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SS18L1-003	OTTHUMT00000080004.2	4493	396aa	OTTHUMP00000031468	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS13491	O75177
SS18L1-004	OTTHUMT00000080005.3	781	128aa	OTTHUMP00000031469	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SS18L1-001	OTTHUMT00000080002.4	899	211aa	OTTHUMP00000031467	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SS18L1-002	OTTHUMT00000080003.1	456	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 5 Transcript length: 781 bps Translation length: 128 residues

Class

protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 09/07/2015 (Created on 17/03/2003)

Alternative symbols

RP5-1005F21.1-004

Remarks

synovial sarcoma translocation gene on chromosome 18-like 1

this variant and either of variant fragments .3.3 and .3.4 could be part of one single variant

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 62,143,795-62,161,580 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000450482

Curation Method

Manual annotation from Havana