Transcript: TFE3-004 OTTHUMT00000080953.4

Description

transcription factor binding to IGHM enhancer 3

Location

About this transcript

This transcript has 10 exons and is annotated with 1 domain and feature.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
TFE3-001	OTTHUMT00000058872.3	3415	575aa	OTTHUMP00000024272	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS14315	A0A024QZ23
TFE3-005	OTTHUMT00000080954.5	3101	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
TFE3-004	OTTHUMT00000080953.4	3279	109aa	OTTHUMP00000274307	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
TFE3-006	OTTHUMT00000080955.2	1058	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
TFE3-002	OTTHUMT00000058873.1	439	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
TFE3-003	OTTHUMT00000058874.2	758	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 10 Transcript length: 3,279 bps Translation length: 109 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 4, last modified on 28/02/2014 (Created on 12/03/2004)

Alternative symbols

XX-FW8389F4.1-004

Other assemblies

This transcript maps to 49,028,726-49,043,410 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000493583

Curation Method

Manual annotation from Havana