Transcript: SHMT1-001 OTTHUMT00000130831.2

Description

serine hydroxymethyltransferase 1 (soluble)

Location

Chromosome 17: 18,327,873-18,363,487 reverse strand.

About this transcript

This transcript has 12 exons and is annotated with 10 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000059094 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SHMT1-001	OTTHUMT00000130831.2	2464	483aa	OTTHUMP00000065139	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS11196	P34896
SHMT1-003	OTTHUMT00000130833.1	1656	444aa	OTTHUMP00000065141	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS11197	-
SHMT1-009	OTTHUMT00000446320.2	879	167aa	OTTHUMP00000261410	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	J3KRZ5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SHMT1-007	OTTHUMT00000446321.3	332	1aa	OTTHUMP00000262576	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SHMT1-006	OTTHUMT00000446318.1	1759	128aa	OTTHUMP00000261408	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	J3KRK5
SHMT1-010	OTTHUMT00000447152.1	2756	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SHMT1-004	OTTHUMT00000130834.1	2652	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SHMT1-008	OTTHUMT00000446319.2	1077	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SHMT1-005	OTTHUMT00000130835.1	570	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 12 Transcript length: 2,464 bps Translation length: 483 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS11196

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 25/11/2004)

Alternative symbols

AC127537.1-001

Other assemblies

This transcript maps to 18,327,873-18,363,487 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000316694

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SHMT1-001 OTTHUMT00000130831.2

Summary

Transcript-based displays