Transcript: PRDM6-003 OTTHUMT00000318228.1

Description

PR domain containing 6

Location

About this transcript

This transcript has 3 exons and is annotated with 2 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
PRDM6-001	OTTHUMT00000318226.2	9267	595aa	OTTHUMP00000197432	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS47259	Q9NQX0
PRDM6-005	OTTHUMT00000318232.1	2662	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
PRDM6-006	OTTHUMT00000371391.1	2373	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
PRDM6-003	OTTHUMT00000318228.1	699	73aa	OTTHUMP00000197433	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
PRDM6-002	OTTHUMT00000318227.1	514	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
PRDM6-004	OTTHUMT00000318229.2	256	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-

Summary

Statistics

Exons: 3 Transcript length: 699 bps Translation length: 73 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 09/08/2007)

Alternative symbols

AC008548.1-003

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 123,099,745-123,180,285 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000434521

Curation Method

Manual annotation from Havana