Description
protocadherin 1
Location
Chromosome 5: 141,853,111-141,878,410 reverse strand.
About this transcript
This transcript has 5 exons and is annotated with 60 domains and features.
Gene
This transcript is a product of gene OTTHUMG00000129661 Show transcript tableHide transcript table
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| PCDH1-002 | OTTHUMT00000320587.3 | 4793 | 1237aa | OTTHUMP00000198748 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS4267 | - | |
| PCDH1-001 | OTTHUMT00000251862.1 | 3827 | 1060aa | OTTHUMP00000160067 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS43375 | Q08174 | |
| PCDH1-006 | OTTHUMT00000370624.1 | 2489 | 17aa | OTTHUMP00000222764 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| PCDH1-003 | OTTHUMT00000370621.1 | 2373 | 382aa | OTTHUMP00000222762 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6RAX3 | |
| PCDH1-007 | OTTHUMT00000370625.3 | 553 | 150aa | OTTHUMP00000222765 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6RBG2 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| PCDH1-009 | OTTHUMT00000476508.1 | 3602 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| PCDH1-008 | OTTHUMT00000370626.2 | 825 | 126aa | OTTHUMP00000222766 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | H0Y9F5 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| PCDH1-005 | OTTHUMT00000370623.2 | 3307 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| PCDH1-004 | OTTHUMT00000370622.1 | 2674 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - |
