Transcript: TOP2B-002 OTTHUMT00000340822.2

Description

topoisomerase (DNA) II beta 180kDa

Location

Chromosome 3: 25,615,473-25,664,907 reverse strand.

About this transcript

This transcript has 27 exons and is annotated with 45 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000155596 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
TOP2B-001	OTTHUMT00000340821.1	5389	1621aa	OTTHUMP00000208317	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS46776	-
TOP2B-002	OTTHUMT00000340822.2	3525	1150aa	OTTHUMP00000208318	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E9PCY5	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
TOP2B-004	OTTHUMT00000340824.2	3892	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
TOP2B-003	OTTHUMT00000340823.1	1945	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
TOP2B-005	OTTHUMT00000340825.2	2049	70aa	OTTHUMP00000209363	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H7BZ82	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
TOP2B-008	OTTHUMT00000340828.1	540	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
TOP2B-006	OTTHUMT00000340826.1	584	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
TOP2B-007	OTTHUMT00000340827.1	451	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 27 Transcript length: 3,525 bps Translation length: 1,150 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 10/11/2008)

Alternative symbols

AC093416.2-002

Remarks

alternative 5' UTR

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 25,615,473-25,664,907 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000424225

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: TOP2B-002 OTTHUMT00000340822.2

Summary

Transcript-based displays