Transcript: SPARC-004 OTTHUMT00000373828.2

Description

secreted protein, acidic, cysteine-rich (osteonectin)

Location

Chromosome 5: 151,673,178-151,686,963 reverse strand.

About this transcript

This transcript has 5 exons and is annotated with 4 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000130122 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SPARC-001	OTTHUMT00000252430.1	3701	303aa	OTTHUMP00000160617	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS4318	P09486
SPARC-005	OTTHUMT00000373829.2	602	115aa	OTTHUMP00000224117	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E5RK62	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SPARC-008	OTTHUMT00000400803.2	576	149aa	OTTHUMP00000239300	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F5GY03	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SPARC-007	OTTHUMT00000400805.2	511	111aa	OTTHUMP00000239301	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F5H4E2	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SPARC-004	OTTHUMT00000373828.2	497	53aa	OTTHUMP00000224116	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SPARC-009	OTTHUMT00000400804.1	218	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SPARC-002	OTTHUMT00000373826.1	1598	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SPARC-003	OTTHUMT00000373827.1	864	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SPARC-006	OTTHUMT00000373830.1	505	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 497 bps Translation length: 53 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 11/01/2010)

Alternative symbols

AC011342.5-004

Remarks

alternative 5' UTR

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 151,673,178-151,686,963 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000522348

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SPARC-004 OTTHUMT00000373828.2

Summary

Transcript-based displays