Transcript: KDM5A-009 OTTHUMT00000397823.1

Description

Lysine-specific demethylase 5A

Location

Chromosome 12: 384,031-389,273 reverse strand.

About this transcript

This transcript has 4 exons and is annotated with 10 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000168055 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Biotype	CCDS	UniProt	Flags
KDM5A-001	OTTHUMT00000397812.1	10763	1690aa	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS41736	P29375
KDM5A-012	OTTHUMT00000397816.2	2338	715aa	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	E7EV89	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
KDM5A-009	OTTHUMT00000397823.1	575	131aa	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F5GZR8	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
KDM5A-010	OTTHUMT00000397822.2	558	122aa	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F5H322	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
KDM5A-011	OTTHUMT00000397821.2	551	126aa	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	F5GZ99	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
KDM5A-002	OTTHUMT00000397813.1	6457	No protein	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
KDM5A-003	OTTHUMT00000397814.1	456	No protein	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
KDM5A-008	OTTHUMT00000397820.1	670	No protein	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
KDM5A-007	OTTHUMT00000397819.1	523	No protein	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
KDM5A-004	OTTHUMT00000397815.1	516	No protein	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
KDM5A-005	OTTHUMT00000397817.1	401	No protein	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
KDM5A-006	OTTHUMT00000397818.1	378	No protein	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Loading component

Statistics

Exons: 4 Transcript length: 575 bps Translation length: 131 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 09/07/2015 (Created on 12/10/2010)

Alternative symbols

RP11-283I3.5-009

Remarks

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 384,031-389,273 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000543507

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: KDM5A-009 OTTHUMT00000397823.1

Summary

Transcript-based displays