Transcript: GALNT9-004 OTTHUMT00000398988.2

Description

UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9 (GalNAc-T9)

Location

Chromosome 12: 132,201,137-132,206,159 reverse strand.

About this transcript

This transcript has 4 exons and is annotated with 3 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000168256 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
GALNT9-009	OTTHUMT00000402967.1	2410	603aa	OTTHUMP00000240468	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS81755	J3KNN1
GALNT9-001	OTTHUMT00000398985.2	1727	237aa	OTTHUMP00000238404	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS41866	-
GALNT9-002	OTTHUMT00000398987.1	1001	237aa	OTTHUMP00000238406	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS41866	-
GALNT9-006	OTTHUMT00000397679.2	1727	376aa	OTTHUMP00000240467	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
GALNT9-004	OTTHUMT00000398988.2	897	96aa	OTTHUMP00000238407	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
GALNT9-005	OTTHUMT00000398989.3	624	54aa	OTTHUMP00000238408	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
GALNT9-011	OTTHUMT00000474803.1	2532	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
GALNT9-008	OTTHUMT00000397680.1	582	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
GALNT9-010	OTTHUMT00000397392.1	1693	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
GALNT9-007	OTTHUMT00000402968.1	556	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 4 Transcript length: 897 bps Translation length: 96 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 25/10/2010)

Alternative symbols

RP13-977J11.1-004

Remarks

alternative 5' UTR

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 132,201,137-132,206,159 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000538356

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: GALNT9-004 OTTHUMT00000398988.2

Summary

Transcript-based displays