Transcript: COPS2-008 OTTHUMT00000417839.2

Description

COP9 constitutive photomorphogenic homolog subunit 2 (Arabidopsis)

Location

Chromosome 15: 49,106,068-49,130,773 reverse strand.

About this transcript

This transcript has 4 exons and is annotated with 4 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000172324 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
COPS2-001	OTTHUMT00000417840.2	6628	443aa	OTTHUMP00000248104	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS32235	P61201
COPS2-003	OTTHUMT00000417841.1	2036	450aa	OTTHUMP00000248105	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS45257	-
COPS2-002	OTTHUMT00000417842.1	1580	379aa	OTTHUMP00000248106	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
COPS2-006	OTTHUMT00000417843.2	803	263aa	OTTHUMP00000248107	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
COPS2-005	OTTHUMT00000417844.2	575	183aa	OTTHUMP00000248108	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
COPS2-008	OTTHUMT00000417839.2	514	55aa	OTTHUMP00000248103	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
COPS2-004	OTTHUMT00000417846.1	668	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
COPS2-007	OTTHUMT00000417845.1	570	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 4 Transcript length: 514 bps Translation length: 55 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 17/06/2011)

Alternative symbols

RP11-325E5.2-008

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 49,106,068-49,130,773 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000560240

Curation Method

Manual annotation from Havana

Select a species

Recent locations

Transcript: COPS2-008 OTTHUMT00000417839.2

Summary

Transcript-based displays