Transcript: SLC6A4-003 OTTHUMT00000447936.1

Description

solute carrier family 6 (neurotransmitter transporter, serotonin), member 4

Location

About this transcript

This transcript has 5 exons and is annotated with 8 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SLC6A4-002	OTTHUMT00000256115.3	6543	630aa	OTTHUMP00000163633	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS11256	P31645
SLC6A4-001	OTTHUMT00000256114.4	2160	618aa	OTTHUMP00000163632	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	J3KPR9	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SLC6A4-003	OTTHUMT00000447936.1	1069	72aa	OTTHUMP00000262233	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	J3QKP3	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SLC6A4-004	OTTHUMT00000447937.1	566	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 5 Transcript length: 1,069 bps Translation length: 72 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 13/03/2012)

Alternative symbols

AC104564.4-003

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 30,197,921-30,211,369 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000579221

Curation Method

Manual annotation from Havana