Transcript: LSM14A-006 OTTHUMT00000451574.1

Description

LSM14A, SCD6 homolog A (S. cerevisiae)

Location

Chromosome 19: 34,172,504-34,196,666 forward strand.

About this transcript

This transcript has 4 exons and is annotated with 6 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000180491 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
LSM14A-001	OTTHUMT00000451573.2	3596	463aa	OTTHUMP00000264465	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS12435	-
LSM14A-003	OTTHUMT00000451576.3	3424	463aa	OTTHUMP00000264468	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS46040	Q8ND56
LSM14A-002	OTTHUMT00000451575.2	2152	422aa	OTTHUMP00000264467	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
LSM14A-004	OTTHUMT00000451577.2	944	314aa	OTTHUMP00000264469	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
LSM14A-009	OTTHUMT00000451580.3	445	148aa	OTTHUMP00000278128	Non stop decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
LSM14A-006	OTTHUMT00000451574.1	559	102aa	OTTHUMP00000264466	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
LSM14A-005	OTTHUMT00000451578.2	3601	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
LSM14A-008	OTTHUMT00000451581.1	699	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 4 Transcript length: 559 bps Translation length: 102 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 20/04/2012)

Alternative symbols

CTD-2518G19.2-006

Other assemblies

This transcript maps to 34,172,504-34,196,666 in GRCh38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000589878

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: LSM14A-006 OTTHUMT00000451574.1

Summary

Transcript-based displays