Transcript: Syne1-002 OTTMUST00000154809.1

Description

spectrin repeat containing, nuclear envelope 1

Location

Chromosome 10: 5,020,917-5,550,678 reverse strand.

About this transcript

This transcript has 146 exons and is annotated with 230 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000063506 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	Flags
Syne1-005	OTTMUST00000154814.1	6990	1431aa	OTTMUSP00000079994	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS56680
Syne1-001	OTTMUST00000154686.1	3443	949aa	OTTMUSP00000079952	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS56679
Syne1-002	OTTMUST00000154809.1	27908	8799aa	OTTMUSP00000079992	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-
Syne1-003	OTTMUST00000154811.1	3894	1288aa	OTTMUSP00000079993	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Syne1-004	OTTMUST00000154816.1	2726	615aa	OTTMUSP00000079995	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Syne1-006	OTTMUST00000154815.1	5412	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-
Syne1-009	OTTMUST00000154810.1	3938	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-
Syne1-008	OTTMUST00000154813.1	3315	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-
Syne1-007	OTTMUST00000154812.1	2785	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-

Summary

Statistics

Exons: 146 Transcript length: 27,908 bps Translation length: 8,799 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 08/08/2016 (Created on 21/07/2016)

Alternative symbols

RP24-315E6.2-002

Annotation Attributes

inferred exon combination [Definitions]

not organism-supported

RNA-Seq supported partial

Other assemblies

This transcript maps to 5,020,917-5,550,678 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000215295

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Syne1-002 OTTMUST00000154809.1

Summary

Transcript-based displays