Transcript: Six6os1-001 OTTMUST00000081169.2

Description

Six6 opposite strand transcript 1

Location

Chromosome 12: 72,881,109-72,917,906 reverse strand.

About this transcript

This transcript has 18 exons and is annotated with 11 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000032630 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Six6os1-001	OTTMUST00000081169.2	2051	574aa	OTTMUSP00000043368	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS25971	Q9CTN5
Six6os1-004	OTTMUST00000081172.3	1970	88aa	OTTMUSP00000043371	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Six6os1-003	OTTMUST00000081171.2	793	143aa	OTTMUSP00000043370	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Six6os1-005	OTTMUST00000081188.2	640	107aa	OTTMUSP00000043386	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Six6os1-002	OTTMUST00000081170.1	1939	203aa	OTTMUSP00000043369	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
Six6os1-006	OTTMUST00000081193.1	503	71aa	OTTMUSP00000043387	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
Six6os1-007	OTTMUST00000081192.1	466	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Six6os1-008	OTTMUST00000081191.2	790	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 18 Transcript length: 2,051 bps Translation length: 574 residues

CCDS

This transcript is a member of the Mouse CCDS set: CCDS25971

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 10/03/2012 (Created on 25/04/2008)

Alternative symbols

RP23-334L9.1-001

Other assemblies

This transcript maps to 72,881,109-72,917,906 in GRCm38 (Ensembl) coordinates.

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Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000044000

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Six6os1-001 OTTMUST00000081169.2

Summary

Transcript-based displays