Transcript: Srek1-001 OTTMUST00000149215.2

Description

splicing regulatory glutamine/lysine-rich protein 1

Location

Chromosome 13: 103,741,612-103,774,608 reverse strand.

About this transcript

This transcript has 12 exons and is annotated with 20 domains and features.

Gene

This transcript is a product of gene OTTMUSG00000061082 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
Srek1-003	OTTMUST00000149216.2	6330	494aa	OTTMUSP00000077450	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS26743	Q8BZX4
Srek1-001	OTTMUST00000149215.2	3934	610aa	OTTMUSP00000077448	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
Srek1-007	OTTMUST00000149236.1	1655	314aa	OTTMUSP00000077455	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A0A1B0GSR3	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
Srek1-002	OTTMUST00000149217.1	2085	198aa	OTTMUSP00000077451	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	A0A1B0GSB4
Srek1-004	OTTMUST00000149222.1	1567	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Srek1-008	OTTMUST00000149239.1	1392	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Srek1-005	OTTMUST00000149223.1	724	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Srek1-006	OTTMUST00000149237.1	641	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
Srek1-009	OTTMUST00000149240.1	690	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
Srek1-010	OTTMUST00000149238.1	619	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 12 Transcript length: 3,934 bps Translation length: 610 residues

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 17/12/2015 (Created on 17/12/2015)

Alternative symbols

RP23-213B1.1-001

Other assemblies

This transcript maps to 103,741,612-103,774,608 in GRCm38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENSMUST00000074616

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: Srek1-001 OTTMUST00000149215.2

Summary

Transcript-based displays