Description
collagen, type XXI, alpha 1
Location
Chromosome 6: 56,056,590-56,394,094 reverse strand.
VEGA68:CM000668.2
About this gene
This gene has 11 transcripts (splice variants), 11 orthologues and 8 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| COL21A1-001 | OTTHUMT00000041004.2 | 4339 | 957aa | OTTHUMP00000016651 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS55025 | A0A158RFW1 | |
| COL21A1-002 | OTTHUMT00000041005.1 | 4094 | 954aa | OTTHUMP00000016652 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS83099 | - | |
| COL21A1-005 | OTTHUMT00000315866.2 | 624 | 136aa | OTTHUMP00000196046 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| COL21A1-003 | OTTHUMT00000041006.2 | 480 | 125aa | OTTHUMP00000196047 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| COL21A1-010 | OTTHUMT00000315867.2 | 2327 | 79aa | OTTHUMP00000233266 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| COL21A1-006 | OTTHUMT00000041009.1 | 2291 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL21A1-007 | OTTHUMT00000041010.2 | 778 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL21A1-008 | OTTHUMT00000041011.1 | 598 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL21A1-009 | OTTHUMT00000041012.2 | 277 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| COL21A1-011 | OTTHUMT00000315868.1 | 1413 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| COL21A1-004 | OTTHUMT00000041007.2 | 555 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
