Description
speckle-type POZ protein
Synonyms
BTBD32, TEF2
Location
Chromosome 17: 49,598,884-49,678,234 reverse strand.
VEGA68:CM000679.2
About this gene
This gene has 24 transcripts (splice variants), 2 orthologues and 1 paralogue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SPOP-001 | OTTHUMT00000365154.2 | 2985 | 374aa | OTTHUMP00000220321 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS11551 | O43791 | |
| SPOP-007 | OTTHUMT00000365406.1 | 1932 | 374aa | OTTHUMP00000220426 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS11551 | O43791 | |
| SPOP-005 | OTTHUMT00000365404.1 | 1865 | 374aa | OTTHUMP00000220424 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS11551 | O43791 | |
| SPOP-012 | OTTHUMT00000365411.2 | 1134 | 262aa | OTTHUMP00000220431 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPOP-011 | OTTHUMT00000365410.10 | 984 | 238aa | OTTHUMP00000220430 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPOP-013 | OTTHUMT00000365412.2 | 919 | 185aa | OTTHUMP00000220432 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPOP-009 | OTTHUMT00000365408.2 | 873 | 138aa | OTTHUMP00000220428 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPOP-008 | OTTHUMT00000365407.10 | 773 | 66aa | OTTHUMP00000220427 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPOP-020 | OTTHUMT00000365486.2 | 563 | 117aa | OTTHUMP00000220472 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPOP-017 | OTTHUMT00000365483.2 | 450 | 32aa | OTTHUMP00000220470 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPOP-010 | OTTHUMT00000365409.2 | 428 | 40aa | OTTHUMP00000220429 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPOP-003 | OTTHUMT00000365235.1 | 1610 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SPOP-004 | OTTHUMT00000365236.3 | 1454 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SPOP-002 | OTTHUMT00000365155.3 | 1449 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SPOP-015 | OTTHUMT00000365414.2 | 918 | 44aa | OTTHUMP00000220433 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SPOP-022 | OTTHUMT00000365561.1 | 779 | 72aa | OTTHUMP00000220496 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| SPOP-019 | OTTHUMT00000365485.1 | 534 | 44aa | OTTHUMP00000220471 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| SPOP-016 | OTTHUMT00000365415.1 | 575 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPOP-018 | OTTHUMT00000365484.1 | 574 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SPOP-025 | OTTHUMT00000439718.2 | 2135 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPOP-024 | OTTHUMT00000365563.1 | 932 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPOP-014 | OTTHUMT00000365413.1 | 613 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPOP-026 | OTTHUMT00000439719.1 | 421 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPOP-023 | OTTHUMT00000365562.1 | 400 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
