Transcript: RPGR-009 OTTHUMT00000355888.1

Description

retinitis pigmentosa GTPase regulator

Location

Chromosome X: 38,284,409-38,327,544 reverse strand.

About this transcript

This transcript has 15 exons and is annotated with 38 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000021361 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
RPGR-009	OTTHUMT00000355888.1	4767	1152aa	OTTHUMP00000215635	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS35229	-
RPGR-001	OTTHUMT00000056234.4	3108	815aa	OTTHUMP00000023140	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS14246	Q92834
RPGR-006	OTTHUMT00000056239.2	428	129aa	OTTHUMP00000215638	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H7C4L1	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
RPGR-004	OTTHUMT00000056237.3	426	142aa	OTTHUMP00000215637	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
RPGR-002	OTTHUMT00000056235.2	2819	646aa	OTTHUMP00000215636	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
RPGR-007	OTTHUMT00000355886.1	2268	480aa	OTTHUMP00000215634	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	A0A0S2Z4Y6
RPGR-003	OTTHUMT00000056236.3	1047	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
RPGR-008	OTTHUMT00000355887.1	653	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
RPGR-005	OTTHUMT00000056240.2	382	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 15 Transcript length: 4,767 bps Translation length: 1,152 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS35229

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 10/06/2009)

Alternative symbols

RP13-43E11.2-009

Remarks

NP_001030025

Other assemblies

This transcript maps to 38,284,409-38,327,544 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000378505

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: RPGR-009 OTTHUMT00000355888.1

Summary

Transcript-based displays