Transcript: SPTLC2-002 OTTHUMT00000414032.1

Description

serine palmitoyltransferase, long chain base subunit 2

Location

About this transcript

This transcript has 9 exons and is annotated with 8 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SPTLC2-001	OTTHUMT00000414030.1	8170	562aa	OTTHUMP00000246380	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS9865	A0A024R6H1
SPTLC2-002	OTTHUMT00000414032.1	1518	407aa	OTTHUMP00000246382	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H0YJV2	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SPTLC2-005	OTTHUMT00000414031.1	460	40aa	OTTHUMP00000246381	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H0YJ96	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SPTLC2-006	OTTHUMT00000414034.1	263	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SPTLC2-004	OTTHUMT00000414033.1	604	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SPTLC2-003	OTTHUMT00000414035.1	510	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 9 Transcript length: 1,518 bps Translation length: 407 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 28/04/2011)

Alternative symbols

RP11-501I4.2-002

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 77,535,600-77,597,321 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000554901

Curation Method

Manual annotation from Havana