Transcript: PAF1-003 OTTHUMT00000464478.1

Description

Paf1, RNA polymerase II associated factor, homolog (S. cerevisiae)

Location

Chromosome 19: 39,385,853-39,391,154 reverse strand.

About this transcript

This transcript has 13 exons and is annotated with 5 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000182968 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
PAF1-001	OTTHUMT00000464477.1	2066	531aa	OTTHUMP00000270570	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS12533	A0A024R0H6
PAF1-003	OTTHUMT00000464478.1	1810	485aa	OTTHUMP00000270571	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS59387	-
PAF1-008	OTTHUMT00000464479.2	281	94aa	OTTHUMP00000270572	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	M0QYC7	5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete
PAF1-002	OTTHUMT00000464480.1	1383	288aa	OTTHUMP00000270573	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	B4DGJ5
PAF1-006	OTTHUMT00000464482.1	760	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
PAF1-005	OTTHUMT00000464483.1	606	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
PAF1-004	OTTHUMT00000464484.1	558	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
PAF1-007	OTTHUMT00000464481.1	280	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 13 Transcript length: 1,810 bps Translation length: 485 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS59387

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 18/07/2012)

Alternative symbols

AC005239.2-003

Remarks

NP_001243755.1

Other assemblies

This transcript maps to 39,385,853-39,391,154 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000595564

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: PAF1-003 OTTHUMT00000464478.1

Summary

Transcript-based displays