Description
VPS50 EARP/GARPII complex subunit
Synonyms
KIAA1861, FLJ20097, DKFZp313I2429, VPS54L
Location
Chromosome 7: 93,232,340-93,359,026 forward strand.
VEGA68:CM000669.2
About this gene
This gene has 19 transcripts (splice variants) and 1 orthologue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| VPS50-019 | OTTHUMT00000341687.1 | 3613 | 964aa | OTTHUMP00000208668 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS43617 | Q96JG6 | |
| VPS50-001 | OTTHUMT00000254652.1 | 1193 | 327aa | OTTHUMP00000162526 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS5630 | - | |
| VPS50-005 | OTTHUMT00000341673.1 | 1898 | 469aa | OTTHUMP00000208663 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| VPS50-008 | OTTHUMT00000341676.2 | 667 | 189aa | OTTHUMP00000208666 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| VPS50-018 | OTTHUMT00000341686.1 | 554 | 155aa | OTTHUMP00000208667 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| VPS50-002 | OTTHUMT00000341670.1 | 3474 | 39aa | OTTHUMP00000208662 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| VPS50-007 | OTTHUMT00000341675.1 | 603 | 39aa | OTTHUMP00000208665 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| VPS50-006 | OTTHUMT00000341674.1 | 538 | 37aa | OTTHUMP00000208664 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | |
| VPS50-017 | OTTHUMT00000341685.1 | 819 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS50-016 | OTTHUMT00000341684.1 | 574 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS50-014 | OTTHUMT00000341682.1 | 504 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| VPS50-003 | OTTHUMT00000341671.1 | 3254 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS50-004 | OTTHUMT00000341672.1 | 1115 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS50-015 | OTTHUMT00000341683.1 | 801 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS50-009 | OTTHUMT00000341677.1 | 760 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS50-012 | OTTHUMT00000341680.1 | 594 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS50-010 | OTTHUMT00000341678.1 | 573 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS50-013 | OTTHUMT00000341681.1 | 558 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| VPS50-011 | OTTHUMT00000341679.1 | 381 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
