Description
collagen, type XXVIII, alpha 1
Location
Chromosome 7: 7,356,203-7,535,853 reverse strand.
VEGA68:CM000669.2
About this gene
This gene has 6 transcripts (splice variants).
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| COL28A1-001 | OTTHUMT00000315899.1 | 4277 | 1125aa | OTTHUMP00000196066 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS43553 | Q2UY09 | |
| COL28A1-006 | OTTHUMT00000315904.1 | 700 | 80aa | OTTHUMP00000196068 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H7BZU0 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| COL28A1-004 | OTTHUMT00000315902.1 | 678 | 130aa | OTTHUMP00000196067 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| COL28A1-005 | OTTHUMT00000315903.2 | 2323 | 142aa | OTTHUMP00000201669 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | H7C3P2 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| COL28A1-002 | OTTHUMT00000315900.2 | 1755 | 67aa | OTTHUMP00000201668 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| COL28A1-003 | OTTHUMT00000315901.1 | 722 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
