Description
ataxia telangiectasia and Rad3 related
Synonyms
SCKL1, SCKL, FRP1, MEC1
Location
Chromosome 3: 142,449,235-142,578,826 reverse strand.
VEGA68:CM000665.2
About this gene
This gene has 10 transcripts (splice variants), 3 orthologues and 1 paralogue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| ATR-001 | OTTHUMT00000353995.2 | 8249 | 2644aa | OTTHUMP00000214450 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS3124 | Q13535 | |
| ATR-002 | OTTHUMT00000353996.1 | 5190 | 457aa | OTTHUMP00000214451 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | H0Y9K2 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| ATR-005 | OTTHUMT00000354088.2 | 929 | 309aa | OTTHUMP00000214508 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | D6RIG7 | 5' and 3' truncations in transcript evidence prevent annotation of the start and the end of the CDS.CDS 5' and 3' incomplete |
| ATR-003 | OTTHUMT00000353997.1 | 724 | 100aa | OTTHUMP00000214452 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | D6RFJ6 | |
| ATR-013 | OTTHUMT00000354096.1 | 718 | 80aa | OTTHUMP00000214512 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | H0Y8Y6 | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| ATR-014 | OTTHUMT00000354097.1 | 553 | 39aa | OTTHUMP00000214513 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| ATR-008 | OTTHUMT00000354091.1 | 552 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| ATR-007 | OTTHUMT00000354090.2 | 837 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATR-010 | OTTHUMT00000354093.1 | 681 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| ATR-011 | OTTHUMT00000354094.1 | 641 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
