Description
Sodium- and chloride-dependent GABA transporter 2
Synonyms
GAT2
Location
Chromosome 12: 220,623-262,873 reverse strand.
VEGA68:CM000674.2
About this gene
This gene has 13 transcripts (splice variants), 13 orthologues and 11 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SLC6A13-001 | OTTHUMT00000397801.1 | 2185 | 602aa | OTTHUMP00000237738 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS8502 | Q9NSD5 | |
| SLC6A13-002 | OTTHUMT00000397810.1 | 1101 | 97aa | OTTHUMP00000237741 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS58198 | - | |
| SLC6A13-004 | OTTHUMT00000397805.2 | 541 | 150aa | OTTHUMP00000237739 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | F5GZA5 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SLC6A13-013 | OTTHUMT00000398016.1 | 2156 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SLC6A13-014 | OTTHUMT00000398018.1 | 948 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SLC6A13-005 | OTTHUMT00000397808.1 | 607 | 123aa | OTTHUMP00000237740 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F5H6S9 | |
| SLC6A13-007 | OTTHUMT00000397809.2 | 560 | 69aa | OTTHUMP00000237850 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | F5H5D9 | |
| SLC6A13-012 | OTTHUMT00000397802.1 | 425 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SLC6A13-015 | OTTHUMT00000398017.1 | 340 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| SLC6A13-008 | OTTHUMT00000397806.1 | 1001 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SLC6A13-009 | OTTHUMT00000397807.1 | 525 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SLC6A13-011 | OTTHUMT00000397803.1 | 494 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SLC6A13-010 | OTTHUMT00000397804.1 | 490 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
