Description
sphingosine kinase 1
Synonyms
SPHK
Location
Chromosome 17: 76,376,584-76,387,860 forward strand.
VEGA68:CM000679.2
About this gene
This gene has 11 transcripts (splice variants), 2 orthologues and 1 paralogue.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| SPHK1-006 | OTTHUMT00000450113.1 | 2238 | 384aa | OTTHUMP00000263533 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS45785 | Q9NYA1 | |
| SPHK1-001 | OTTHUMT00000450120.1 | 2138 | 470aa | OTTHUMP00000263538 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS11744 | - | |
| SPHK1-003 | OTTHUMT00000450118.1 | 1851 | 398aa | OTTHUMP00000263537 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS59297 | Q96GK1 | |
| SPHK1-002 | OTTHUMT00000450117.1 | 1821 | 384aa | OTTHUMP00000263536 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS45785 | Q9NYA1 | |
| SPHK1-004 | OTTHUMT00000450121.1 | 1779 | 384aa | OTTHUMP00000263539 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS45785 | Q9NYA1 | |
| SPHK1-009 | OTTHUMT00000450114.2 | 858 | 152aa | OTTHUMP00000263534 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | K7EMA4 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPHK1-010 | OTTHUMT00000450116.2 | 588 | 111aa | OTTHUMP00000263535 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | K7EJ32 | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPHK1-008 | OTTHUMT00000450112.2 | 541 | 5aa | OTTHUMP00000263532 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| SPHK1-007 | OTTHUMT00000450119.1 | 1650 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| SPHK1-005 | OTTHUMT00000450115.1 | 2502 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| SPHK1-011 | OTTHUMT00000450122.1 | 456 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
