Description
tropomyosin 4
Location
Chromosome 19: 16,067,021-16,103,005 forward strand.
VEGA68:CM000681.2
About this gene
This gene has 19 transcripts (splice variants), 3 orthologues and 2 paralogues.
Transcripts
| Name | Transcript ID | bp | Protein | Translation ID | Biotype | CCDS | UniProt | Flags |
|---|---|---|---|---|---|---|---|---|
| TPM4-002 | OTTHUMT00000459673.3 | 2666 | 248aa | OTTHUMP00000268507 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS12338 | P67936 | |
| TPM4-001 | OTTHUMT00000459672.2 | 1417 | 284aa | OTTHUMP00000268506 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | CCDS46007 | - | |
| TPM4-014 | OTTHUMT00000460164.2 | 801 | 16aa | OTTHUMP00000268696 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TPM4-008 | OTTHUMT00000460157.2 | 708 | 170aa | OTTHUMP00000268692 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TPM4-015 | OTTHUMT00000460165.2 | 635 | 102aa | OTTHUMP00000268697 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TPM4-007 | OTTHUMT00000460156.2 | 586 | 69aa | OTTHUMP00000268691 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TPM4-012 | OTTHUMT00000460162.2 | 563 | 138aa | OTTHUMP00000268695 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TPM4-009 | OTTHUMT00000460158.2 | 558 | 179aa | OTTHUMP00000268693 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TPM4-010 | OTTHUMT00000460159.2 | 367 | 96aa | OTTHUMP00000268694 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete |
| TPM4-019 | OTTHUMT00000460169.1 | 262 | 59aa | OTTHUMP00000268699 | <p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| TPM4-005 | OTTHUMT00000460160.1 | 1369 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| TPM4-004 | OTTHUMT00000459675.1 | 1279 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| TPM4-003 | OTTHUMT00000459674.1 | 923 | No protein | - | <p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact | - | - | |
| TPM4-016 | OTTHUMT00000460166.1 | 712 | 110aa | OTTHUMP00000268698 | Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay | - | - | 5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete |
| TPM4-018 | OTTHUMT00000460168.1 | 653 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| TPM4-013 | OTTHUMT00000460163.1 | 521 | No protein | - | <p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript | - | - | |
| TPM4-006 | OTTHUMT00000460170.1 | 2672 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TPM4-011 | OTTHUMT00000460161.1 | 877 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - | |
| TPM4-017 | OTTHUMT00000460167.1 | 545 | No protein | - | <p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron | - | - |
