Transcript: SYNJ2-001 OTTHUMT00000042857.3

Description

synaptojanin 2

Location

Chromosome 6: 158,033,490-158,063,872 forward strand.

About this transcript

This transcript has 6 exons and is annotated with 5 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000015904 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SYNJ2-002	OTTHUMT00000042858.2	7378	1496aa	OTTHUMP00000017494	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS5254	O15056
SYNJ2-006	OTTHUMT00000491990.1	7332	1259aa	OTTHUMP00000283611	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
SYNJ2-008	OTTHUMT00000491989.1	3959	1288aa	OTTHUMP00000283610	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
SYNJ2-004	OTTHUMT00000042860.2	939	136aa	OTTHUMP00000017496	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	H7BY56	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SYNJ2-005	OTTHUMT00000042861.3	680	136aa	OTTHUMP00000017497	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	Q5TA15	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SYNJ2-001	OTTHUMT00000042857.3	810	165aa	OTTHUMP00000017493	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	H0YEV8	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SYNJ2-003	OTTHUMT00000042859.2	5091	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SYNJ2-007	OTTHUMT00000491991.1	2040	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 810 bps Translation length: 165 residues

Class

nonsense mediated decay [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 3, last modified on 28/02/2014 (Created on 28/08/2003)

Alternative symbols

RP11-266C7.2-001

Remarks

synaptojanin 2 (inositol phosphate 5'-phosphatase 2, INPP5H) (contains FLJ23714)

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 158,033,490-158,063,872 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000485863

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SYNJ2-001 OTTHUMT00000042857.3

Summary

Transcript-based displays