Transcript: COL4A1-006 OTTHUMT00000476754.2

Description

collagen type IV alpha 1

Location

About this transcript

This transcript has 15 exons and is annotated with 13 domains and features.

Gene

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
COL4A1-001	OTTHUMT00000045759.5	6532	1669aa	OTTHUMP00000018698	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS9511	P02462
COL4A1-005	OTTHUMT00000476753.1	2547	519aa	OTTHUMP00000276058	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS76649	-
COL4A1-006	OTTHUMT00000476754.2	1077	223aa	OTTHUMP00000276059	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
COL4A1-002	OTTHUMT00000312865.2	5470	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
COL4A1-004	OTTHUMT00000312867.1	593	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
COL4A1-003	OTTHUMT00000312866.1	581	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 15 Transcript length: 1,077 bps Translation length: 223 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 09/07/2015 (Created on 12/03/2014)

Alternative symbols

RP11-472K17.2-006

Annotation Attributes

dotter confirmed [Definitions]

Remarks

CDS end not found

mRNA end not found

Other assemblies

This transcript maps to 110,206,661-110,298,899 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000615732

Curation Method

Manual annotation from Havana