Transcript: SHROOM1-002 OTTHUMT00000133034.1

Description

shroom family member 1

Location

Chromosome 5: 132,822,320-132,826,310 reverse strand.

About this transcript

This transcript has 7 exons and is annotated with 19 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000059835 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SHROOM1-001	OTTHUMT00000133033.1	4019	852aa	OTTHUMP00000066201	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS54902	Q2M3G4
SHROOM1-002	OTTHUMT00000133034.1	3190	847aa	OTTHUMP00000066202	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS4161	-
SHROOM1-007	OTTHUMT00000133039.2	2352	783aa	OTTHUMP00000066204	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	A6NN40
SHROOM1-003	OTTHUMT00000133035.3	1080	324aa	OTTHUMP00000066203	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	C9JXU1	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SHROOM1-005	OTTHUMT00000133037.2	475	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
SHROOM1-004	OTTHUMT00000133036.1	423	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SHROOM1-006	OTTHUMT00000133038.1	281	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SHROOM1-008	OTTHUMT00000470235.1	351	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 7 Transcript length: 3,190 bps Translation length: 847 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS4161

Class

Known protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 06/01/2005)

Alternative symbols

AC004775.4-002

Other assemblies

This transcript maps to 132,822,320-132,826,310 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000319854

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SHROOM1-002 OTTHUMT00000133034.1

Summary

Transcript-based displays