Transcript: SMYD4-002 OTTHUMT00000318357.2

Description

SET and MYND domain containing 4

Location

Chromosome 17: 1,781,692-1,800,805 reverse strand.

About this transcript

This transcript has 6 exons and is annotated with 15 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000090570 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
SMYD4-001	OTTHUMT00000207108.4	4384	804aa	OTTHUMP00000115681	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS11013	Q8IYR2
SMYD4-002	OTTHUMT00000318357.2	3016	558aa	OTTHUMP00000256918	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete
SMYD4-005	OTTHUMT00000438278.2	793	223aa	OTTHUMP00000257351	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SMYD4-003	OTTHUMT00000318358.3	586	177aa	OTTHUMP00000257352	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
SMYD4-006	OTTHUMT00000438280.1	515	72aa	OTTHUMP00000257353	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
SMYD4-007	OTTHUMT00000438279.1	746	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-
SMYD4-004	OTTHUMT00000318359.1	553	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 3,016 bps Translation length: 558 residues

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 14/08/2007)

Alternative symbols

AC130689.3-002

Remarks

CDS start not found

mRNA start not found

Other assemblies

This transcript maps to 1,781,692-1,800,805 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000491788

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SMYD4-002 OTTHUMT00000318357.2

Summary

Transcript-based displays