Transcript: SCO1-002 OTTHUMT00000252730.2

Description

SCO cytochrome oxidase deficient homolog 1 (yeast)

Location

Chromosome 17: 10,680,354-10,697,530 reverse strand.

About this transcript

This transcript has 6 exons and is annotated with 6 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000130364 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt
SCO1-001	OTTHUMT00000252729.4	9612	301aa	OTTHUMP00000160897	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS11158	O75880
SCO1-002	OTTHUMT00000252730.2	1601	270aa	OTTHUMP00000160898	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	-
SCO1-005	OTTHUMT00000440328.2	1654	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
SCO1-007	OTTHUMT00000471578.1	654	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
SCO1-006	OTTHUMT00000440329.1	571	91aa	OTTHUMP00000258399	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-
SCO1-003	OTTHUMT00000440330.2	565	No protein	-	<p>Transcripts that don't contain an open reading frame (ORF) and cannot be placed in one of the other categories.</p>Processed transcript	-	-
SCO1-004	OTTHUMT00000440331.1	563	No protein	-	<p>Alternatively spliced transcript that is believed to contain intronic sequence relative to other coding transcripts in a given locus.</p>Retained intron	-	-

Summary

Statistics

Exons: 6 Transcript length: 1,601 bps Translation length: 270 residues

Class

Novel protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 2, last modified on 28/02/2014 (Created on 23/11/2005)

Alternative symbols

AC005291.6-002

Other assemblies

This transcript maps to 10,680,354-10,697,530 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000577427

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: SCO1-002 OTTHUMT00000252730.2

Summary

Transcript-based displays