Transcript: EFHD1-004 OTTHUMT00000330599.1

Description

EF-hand domain family, member D1

Location

Chromosome 2: 232,662,733-232,682,770 forward strand.

About this transcript

This transcript has 3 exons and is annotated with 8 domains and features.

Gene

This transcript is a product of gene OTTHUMG00000133263 Show transcript tableHide transcript table

Name	Transcript ID	bp	Protein	Translation ID	Biotype	CCDS	UniProt	Flags
EFHD1-001	OTTHUMT00000257040.2	2259	239aa	OTTHUMP00000164362	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS2497	Q9BUP0
EFHD1-002	OTTHUMT00000330597.1	1817	127aa	OTTHUMP00000203630	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS82580	Q8WYH2
EFHD1-004	OTTHUMT00000330599.1	1538	127aa	OTTHUMP00000203632	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS82580	Q8WYH2
EFHD1-003	OTTHUMT00000330598.1	1156	143aa	OTTHUMP00000203631	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	CCDS58755	-
EFHD1-007	OTTHUMT00000330602.2	541	81aa	OTTHUMP00000203634	<p>Genes and/or transcript that contains an open reading frame (ORF).</p>Protein coding	-	C9JTV4	3' truncation in transcript evidence prevents annotation of the end of the CDS.CDS 3' incomplete
EFHD1-005	OTTHUMT00000330600.1	1333	No protein	-	<p>Error in the sequence in a public database (for example UniProtKB, NCBI RefSeq). Annotation is by the <a rel="external" href="http://vega.sanger.ac.uk/info/about/gene_and_transcript_types.html">VEGA/Havana</a> project.</p>Artifact	-	-
EFHD1-006	OTTHUMT00000330601.1	843	99aa	OTTHUMP00000203633	Transcript is thought to undergo nonsense mediated decay, a process which detects nonsense mutations and prevents the expression of truncated or erroneous proteins. Nonsense mediated decay	-	-	5' truncation in transcript evidence prevents annotation of the start of the CDS.CDS 5' incomplete

Summary

Statistics

Exons: 3 Transcript length: 1,538 bps Translation length: 127 residues

CCDS

This transcript is a member of the Human CCDS set: CCDS82580

Class

Putative protein coding [Definition]

Author

This transcript was annotated by Havana

Version & date

Version 1, last modified on 28/02/2014 (Created on 18/06/2008)

Alternative symbols

AC064852.2-004

Remarks

alternative 5' UTR

Other assemblies

This transcript maps to 232,662,733-232,682,770 in GRCh38 (Ensembl) coordinates.

Jump to this stable ID in Ensembl

Alternative transcripts

Ensembl transcript having exact match with Havana:	ENST00000410095

Curation Method

Manual annotation from Havana

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Recent locations

Transcript: EFHD1-004 OTTHUMT00000330599.1

Summary

Transcript-based displays